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Urinary Tract 

Infections 

KIDNEY INFECTIONS

Dr. AMMAR FADIL


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General principles 

• Urinary tract infections (UTIs)

is inflammatory response of the  urothelium to 
bacterial invasion.                

are common

affect men and women of all ages,. 

The diagnosis of UTI is based on 

symptomatology, urinalysis, &  urine culture 
findings

.

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Definitions 

• Pyuria

– is the presence of white blood cells (WBCs) in the 

urine in dipstick or 

10 WBC/HPF 

in sediment of 

centrifuged urine. occur either due to

– bacterial infection or
– sterile pyuria absence of bacteriuria carcinoma in 

situ, TB infection, & stones

• Bacteriuria

– is  the presence of bacteria in the urine  which is 

normally free of bacteria. symptomatic or 
asymptomatic

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Routes of infection

• Ascending route (commonest) 

bacteria derived from the large 

bowel, colonize the perineum, 

vagina, and distal urethra.

They ascend along the urethra to the 

bladder (risk is increased in 

♀ as the 

urethra is shorter), causing cystitis, 

&  from the bladder they 

may

ascend, via the ureters, to involve  the kidneys 

(pyelonephritis

).

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Routes of infection

• Hematogenous route

Infection of the kidney is uncommon. Occurs in 

patients with Staphylococcus aureus
bacteremia & TB 

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Predisposing Factors

1.stasis & obstruction:

– prostatic enlargement
– vesico ureteric reflux of urine  VUR
– neurogenic bladder (spinal cord injury, DM)

2. foreign body:

– catheter
– stone

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3.Decreased resistance

:

– diabetes mellitus

malignancy

immunosuppression

4. congenital anomaly 

UPJ obstruction, 

APCKD. 

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Urinary pathogens

• Most UTIs are caused by facultative anaerobes 

usually originating from the bowel flora.

“ 

KEEPS

– K lebsiella
– E . Coli (85%)
– Enterococci
– Proteus mirabilis,  pseudomonas
– S .saprophyticus , S. Fecalis

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UTI

• Isolated UTI

– has an interval of at least 6 months between 

infections.

• Recurrent UTI

– is >2 infections in 6 months, or 3 within 12 

months. 

• Unresolved infection

– is failure of the initial treatment course to 

eradicate bacteria from the urine.

• antimicrobial resistance, 
• patient noncompliance with therapy,
• insufficient antibiotic dosing

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UTI basic investigation

• Urine dipstick MSU  is used as a first-line 

screening. 

• GUE: the observation of WBC, bacteria & RBC 
• Urine culture is the gold standard for the 

diagnosis of UTI.

Imaging studies are not required in most cases  of UTI  

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Further investigation

• US:

calculi & hydronephrosis

PVR 

• VCUG 

vesicoureteral reflux Dx.

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Further workup

is needed in

upper tract infection (fever, flank pain,    

malaise, that suggest 

acute pyelonephritis, a 

pyonephrosis, or perinephric abscess

Pregnant patient 

Unusual infecting organism (e.g., 

Proteus), 

suggesting the possibility of an ??

Recurrent UTIs 

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Lower UTI

cystitis

UTI

Upper UTI

Pyelonephritis

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Acute pyelonephritis

• pyelonephritis is defined as 

inflammation of the kidney 
and renal pelvis

• A clinical diagnosis is based 

on the presence of fever, flank 
pain, and tenderness. It may 
affect one or both kidneys.

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Symptoms 

The onset is usually abrupt. 

fever(38.5 to 40 C),rigor &  flank pain   

symptoms of 

cystitis

(dysuria, frequency, urgency, suprapubic

pain) These  are usually suggestive of a lower

urinary tract infection that led to the ascending 

infection, which resulted in the subsequent acute 

pyelonephritis

.

Nausea and vomiting are common.

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• Renal angle 

tenderness.

Physical sign


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Investigation 

• GUE: 

increased pus cells, WBC casts, & RBC. 

Bacteria are often seen.

• Urine culture & sensitivity test.
• Blood tests may show a leukocytosis.
• RFT 
• U/S & KUB: to see if there is an underlying 

upper tract abnormality (such a ureteric stone)

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Treatment 

• involves the administration of antibiotics 

according to the clinical presentation and 
most likely causative organism, before 
culture sensitivities are available

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Treatment 

patients who have a fever but   are not 

systemically unwell, outpatient oral Rx 

1

st

choice is Fluoroquinolones

ciprofloxacin 500 mg PO bid, or

levofloxacin 750   mg PO qd)

2

nd

Trimethoprim-sulfamethoxazole

If the patient is systemically unwell, admit  to 
hospital and start IV fluids & parenteral  
antibiotics

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Parenteral antibiotics

We use one of the following: 

1. 3

rd

generation cephalosporine

(

cefotaxime or ceftriaxone, ceftazidime

).    

These are active against gram-negative bacteria. also has 

activity against Pseudomonas aeruginosa.

2. I.V Fluoroquinolones (e.g., ciprofloxacin)

They exhibit good activity against  

Enterobacteriaceae P. aeruginosa

3.ampicilline & gentamycin

Parenteral antibiotics for 3 days then switch to  oral for total  

10-14 d

.

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Treatment 

However,  if the patient does not respond 
within 3 days to this regimen of IV antibiotics 
(confirmed on sensitivities),  a CT urogram
is essential.

• The lack of response to treatment suggests the 

possibility of a 

pyonephrosis

(i.e., pus in the 

kidney, which, like any abscess, will only 
respond to drainage)

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Pyelonephritis of pregnancy

usually occurs 

during 3

rd

trimester

when hydronephrosis & stasis in the

urinary tract are most pronounced .

Complications: 

abortion or premature birth.

Rx: 

Pregnant women should be

hospitalized and treated initially with 

parenteral antimicrobial agents 3

rd

generation cephalosporine

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Urinary infection in childhood

• It is one of the most common bacterial diseases in 

children;

• is important to recognise because it may damage the 

growing kidney. 

• symptoms are often non-specific but the child  

may  pass cloudy or offensive urine.

Pain or screaming on micturition

child fails to thrive

unexplained pyrexia. 

The older child may complain of loin pain

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VUR

• VUR of urine is detectable in about 35% of 

children with recurrent UTI

Up to 50% of children with UTI have an underlying anatomical abnormality (e.g. 

reflux or obstruction).

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Pathogenesis of 

VUR

• VUR 

retrograde flow of urine from the bladder into the upper 

urinary tract.

• The ureter passes obliquely through the bladder wall (1–2 

cm), where it is supported by muscular attachments that 
prevent urine reflux during bladder filling and voiding.

• Reflux occurs when the intramural length of ureter 

is too short .The degree of reflux is graded I

–V.

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Complications VUR 

• Recurrent UTI
• reflux nephropathy with hypertension & 

progressive renal failure.

– reflux nephropathy is the most common cause 

of end-stage renal failure in children 

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Dx VUR

VCUG to diagnose & 
grade reflux

– Urinalysis

Urine culture a pure 

growth of more than 10

5

organisms/ml.

– ultrasound scan

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Treatment 

• Medical treatment

Continuous antibiotic prophylaxis: e.g trimethoprim 1

–2 

mg/kg/day, usually as a single night-time dose.

Endoscopic 

• subureteric injections 

(Bulking agent) e.g  Deflux

• Surgery

Surgical reimplantation of the ureters is 

reserved for those in whom 

conservative measures fail.

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Chronic pyelonephritis

Refers  to the small, contracted, atrophic kidney 
that has been produced by bacterial infection, 

It can be a radiological or pathological diagnosis.

chronic pyelonephritis is the end result of 
longstanding reflux or obstruction. These 
processes damage the kidneys, leading to 
scarring.

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Clinical Presentation

Most of the changes of chronic 
pyelonephritis seem to occur in infancy, 
because the growing kidney is most 

susceptible to scarring

in adults  renal damage is rare in non 
obstructive UTIs

There are no symptoms of chronic 
pyelonephritis until it produces renal 
insufficiency, and then the symptoms are similar 
to chronic renal failure.

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Pyonephrosis

• This is an infected hydronephrosis, the 

infection being severe enough to cause 
accumulation of pus with the renal pelvis 
and calyces of the kidney. 

• causes include ureteric obstruction by 

stone and PUJ obstruction.

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Pyonephrosis 

• Clinical presentation: patients very ill ,high fever 

,flank pain ,chills ,renal tenderness,  Previous 
history of urinary calculi, infection or surgery. 

• Management  antibiotics and drainage of 

infected pelvis ( ureteral catheter, nephrostomy)

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perinephric abscess

• develops as a 

consequence of extension 
of infection outside the 
parenchyma of the 
kidney.

Patients with pyonephrosis, 

particularly when a 
calculus is present in the 
kidney, are susceptible to 
perinephric abscess
formation.

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Perinephric abscess

These patients are often diabetic, & 

associated conditions such as an 
obstructing ureteric calculus.

treatment is surgical drainage 

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Renal tuberculosis

The kidney is among the most common sites for 
extrapulmonary tuberculosis.

Renal tuberculosis (TB) 

is caused by Mycobacterium tuberculosis.

arises from haematogenous spread          

from a distant focus which is impossible  to identify. 

are usually confined to one kidney. 

the latent period between  exposure &

reactivation of  disease is 10- 40 yr

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Kidney

Hematogenous spread causes granuloma 
formation in the renal cortex, associated with 
caseous necrosis of the renal papillae and 
deformity of the calyces, leading to release of 
bacilli into the urine. This is followed by 
healing fibrosis and calcification, which 
causes destruction of renal architecture and 
autonephrectomy.

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Ureters

• Seeding of the urine may also result in 

involvement of the bladder and male 
genital organs 

• TB Spread is directly from the kidney and 

can result in stricture formation.

• Bladder Infection is usually secondary to 

renal infection. Disease progression 
causes fibrosis and contraction (resulting 
in a small capacity ‘thimble’ bladder), 

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• Renal tuberculosis is often associated 

with tuberculosis of the bladder and 
typical tuberculous granulomas may be 
visible in the bladder wall

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Clinical features

• Because of the slow progression and variable 

course of the disease, there is no classic 
presentation.

• Renal  symptoms gross hematuria; dull flank 

discomfort; and ureteral colic secondary to 
passage of clots, debris, or calculi. 

• Constitutional complaints such as fevers, chills, night sweats, 

weight loss, and malaise are uncommon. 

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• It is only when the bladder is involved 

that the patients become severely 
symptomatic.

• Frequency is the most common 

presenting symptom and is often 
progressive and occurs during the day 
and at night. Pain, urgency, and dysuria 
are also common. 

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physical examination

• A chronic draining fistula tract from 

previous renal surgery.

• Patients with chronic epididymitis 

unresponsive to therapy should also be 
evaluated.

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Investigation 

• Urine: At least 3 early morning urines . A 

typical finding is sterile pyuria (leukocytes, 
but no growth). Ziehl

–Neelsen staining will 

identify these acid- & alcohol fast bacilli 
(cultured on Lowenstein

–Jensen medium).

pyuria C\S no growth of bacteria ?

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investigations

• KUB:  Findings include renal 

calcification (cement kidney)

• IVU: irregular calyces,

hydronephrosis

caused by stricture of the  

ureter

.

• CXR and sputum
• Tuberculin skin test

• Cystoscopy: bladder  studded with 

granulomas which cluster 
particularly around the ureteric 

orifices

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Treatment 

• Medical Rx is with 6 months of isoniazid, 

rifampicin, and pyrazinamide

• If the kidney has no function it is best to 

perform a nephroureterectomy . 

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Investigation

• Urinary sediment 

may show pus cells, 
proteinuria
.

• IVP: irregularity of 

the kidney outlines
with blunting and 
dilation of calyces

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Management

• treating infection, if present; and 

monitoring and preserving renal 
function. 

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